HsaINT0186196 @ hg19
Intron Retention
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:12917]
Coordinates
chr20:18278933-18285822:+
Coord C1 exon
chr20:18278933-18279108
Coord A exon
chr20:18279109-18285651
Coord C2 exon
chr20:18285652-18285822
Length
6543 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTTTCTAATCTCTATTCCAGTGT
3' ss Score
9.13
Exon sequences
Seq C1 exon
CTTCAAAAGTTCTGCTGCCTGAGAGTAACGTCACAGTAATGGAACGGGAAGATTCTGGAATCTGTGTCCCCACCTAGACAACGATTATACTGGCAGGATCTATCAGGTGTACCTATTTTGGAACTCTGGAGTCTAGTTGAAGGCCTCCAGTTCCCAGGGGGAAGGAAGCATGGAGG
Seq A exon
GTAAGTCACAGCTAATTTTAGCTCTTAGTATAGTAGCAGCTACCTGTCATCCACCCTGCCAGCCCTATGGCAGGTAGCTGTCCTATATTCCTAGATCAGCTTCTGCATGGCTTGTGGGAGACATGGTGGACAATAAGGACCCTTTACTCCAAATATTGAGGATCTGTGTTCTGATTGTTAATTGCTGTTTCTGATCACAGAGGTGGTCCACTTAAATCCCCTGAAAGCTACTTCAGCCAATTGCAACCCCCCACTGGCTAAAGTGGCTTTTAGGGGATTTAAGGAGCCAGAGTCTGTTTTCCCCCACTGAAGTTCTCTTTTTCCCCTTTGAGAGCGAAATATTTGAGGACTAGTATATTGAAAAGCAACTGCATATGGGGGAATGTAGAAGGTATACCCATGGAAAGGCACAGGCTCAGAAAACACCTGAGAAGACCTTAAGCTTACACCTCAGGCTGATTCTTAGCATGGAGACACCCTACATCAATATTAAAAACAAAACAAAACAAAACAAAAAAACAAAAGGGAGACTCTAACAGAGTTGCTGCTTTATAAGATTTAAATGTCCAGTTTTTGACAAAAATCATAAGGCATACAAAGAATGAGGAAAATATGACCCATTCAAAGGGGAAAAAAAATGAATAAACTGAAAACATCCCTGACAAAGGCCAGATAGTGTACTTACTAAACAAAGACTTTAAAACAGCCATCTTAAAGAGCTAAAGGAAGATGTGGAGAAAGTCAAGAAAATAATGTAAGAACAACATGGAAATATCAATAAACAGACAGAAAACATAAAAATAAACCAAAAATAAATTTTGGATTTAAAAAGTACAACTGAAAAGAAAAGTTCATTAGAGGGATTCAGAAGTAGATTTGAGCAGACGGAAGAATCAGCAAACCAGGAGATAGGACAATTATCAAGTCTGAGGGACACAGACAAAAAGATTAAAGAAAAGTGAACAGAGCCTAAGGGAACTATGGGATACTATCAAGTGGATCAACTATGCCTTATGGGATTCCCAGGAGAAGACAAAAAAGGGACAGAGAGATTGTTTGAAGAAATAATGGCTGACAACTTCCCAAGTTTGATGAAAGACTTGAATATAAACATCCAAGCAGCTCAATGAACTATAAGTAGGAAAACCTCAAAAGGACTCACACTGAGAAACAATGTAATCAAAGCATCAAAAGCCAAAGGTAACAGAGGGATTTTTGAAAGCAGCAAGAGAAAAGCAACACTACGTACAAGGGATCCTCAATAAGATTATTAGCAAATTTCTTACGAAAAACCTCTCGGGCCAGACGTCAGTGGGTTGATATATTTGAAGTGCTAAAAGAAAACGAACAAACAAAAAAGCCTGCCAATCAAAAATTCTGTATCTGGCAAAACTGCCCTTCATTACTGAGGCAGAAATTAAGACATTCTCGATAAGTTGGTGGAGATTACAACCACTAGACCTACCCTACAAGAAATATTAACAAGAGTCTTTCAGGTTGAAATAAAAGGACTTTAGACAGTTACATGAAGCCATATAAAAAAATTAAGTTCTCCATTAAAGGTTAATACACAGGTAGTAATATAAGCTAGTATTACTGTAACTGTGCTTTGTAACTTCACTTTTTGTTCTCTATATGAGACTTAGGAGACTACTGCATTTAAAAAAAAATAGTCTATGTTTTTGACCACACAGTGCATAAAGATGTAATTTTGTGACATCAGTAATGAGTTGGAGATGGAGCTGTATAGGAACACAGTTTTTATATGCTATTGAAGTTAAGCTGATGAGTTCAAATTCAGTTTTTAAAGTTTAGGACATTAAGTGTAATCCCCTTGGTTACCACAAAGAAAATATCTGTAGGATGTAGAGAAAAGCAAGTGAGATGGGAATTTAAAAGTTGCATTGAAAAAATCAACCAAAGACAAAAAAAGGACAGTAATACAGGAAATTAAGAATAAAAATCTGCAAGACATGTAGAAAACAAAAAGCAAAATAGCAGAAATCAGTCCCTCCTTATCAGTAATTATTTTATATGTAAATGCTTTAAACTCTAAAACAATTTGGCATAGTGGATTTAAAAAAACATGATCTAACTATATGCTGTCTACAAGAAACTCACTTTATATCCAAAGGCACAAATAGTTTCAGAAGAATGGAAAAAGACGTTTCATGCAAATAGAAACCAAAGAAAGTAGGAGTGGCTACATTAATACCAGAAAAAATAGACTTTAAATTGAAAAAGGTTACAAGAGATAAGGAAGACATTAATACAAAAGGTTTACTACAGCAAGAAGATATAGAAATTATACACATATACCTCATAACAGACCCTTTAAATATATAAAGAAAAATGGGCAGCATTATAGGGAGTAGAGTTTTATAATAATAATTGGAGATTTCAGTACCCCACTCTAAATAATGGATAGAACAATAAGAAAGACAATAAGTAAAAAAATAGAAGACTTGAACAAGGTGTAAATCCAATAGATATAATAGACATATTCCGAACATTGTACCCAACAAAAATAGAATACACGTTCTTCTCAAGTACACATGGGACATTTTGCAGGATAGACTAAATGTTAGGCCACAAATTAAGACTGATATCATAAGAAGTATCTTCTACCACAACAAGATGAAGATTGAAACCAATAACTGAAAGAAAATTTAAAAATTCACAAATACGTGAAAATTAAAGAACATACTCTTAAACCAGTAGGTAGAGGAATAAACTACAAGGGAAATTAGACCATACTTTGAGTCAAGTGAGAAAGAAACACAACATAGGAAAACTTATGAGATGAAGTAAAGTGCTAGGCAGGAAATTTTTAGCTGAAATACATTAGAAAGCAAAATCTCCAAGGAACAACCTAATTTTACAACTTAGGGAACCAGAAAAAGAAGAACAAACTAAACCTAAAGCTAGCAGAAGGAAGGAAATAATAAACACTGGAGCAGAGTCAAATAAAATAGAGAATAGAAGGATAATAGCAGAAAGCAACAAAACTTAAAGTTGGTTCTTTGAAAGGATTAAATAAATTGACAAACCTTTAGCTTTATTGACTAAGAAAATAAGAAAACTCAAATTACTAAAATCAGAAATGAAAGTGAGGACATTACTATTGTTTCTACAGAAGTAAAAAGGATTGTACAAGAGAACTATAAATTGTATGCCAACAAATCGGATGCCCTAGATGAAGTGGGCAAATTCTTAGAATGCAAAACCTATCAAGACTGAATCATAAGAAATCAAAATTTTGAATAAGTGTATAACTAGTGAGGAGATTGAATCAGTAATCAAAACCATCCTGATAAACAATCAGGCCCTCCTGGACCTGATGACTTTGCTGGTGAATTCTGCCAAACATTTAGAGAAGAACTAACACTAGTTCTTCTCAAACTTCTCCAAAAGTATTGAAGAGGAGGGAATACTGCCTGACTCATTCTGTGAGGCCAGCATTACTCTGATACCAAAACCAGACAAAGACACTACAAGAAAATTACATCATTTATAACATTGATGCAAAAAATTTCAACAAAATACTAGCAAACTGAATTCAACAAGCGTTTGAAAAGAATTATACACCATGACCAAGTGGAATTTATTCCTGAAATGCAGGATTGTTCAACATACAAAAATAAATGGGTATATGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGGGGCCGAGGTTGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAGCATGGTGAAACCACATCCCTACTGAAAATACAAAAAAATTAGCCAGGCATGGTGGCACGTGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATTGCTTGGACCCAGGAAGCAGAGCTTGCAGTGAGCCAACATCGTGCCTCTGCACTCCAGCCTGGGTGACAAGAGCAAAAACTCTGTCTCAAAAAAAAAAAAAAAAAATCAATGCATATAAAATATCACATTAACAGATGAAAGAAAAAAAACACATGATCATCTCAATGCAGAAAAGTATTTGACAGAATTTAGCACCCTTTTATAGAAAATAACTAGAAATAGAAGGAAACCACTCTATAATAAGGCCATATGCAAAAATCTCACAGCTAACATACTCCATGGTGAAAGACTGAAAGCTCCAACATCAGCAATAAGGCAGCAATGCCCACTTTTGCCACTTATAGCCAACAGAGTATTGGAAGTGTTAGCCAGAGAAAATAAGCAAGAAAAAGAAACAAATGCCATCTGAATGGGAAAAAGCGAAGTTATCTGAGTTTGCAGGTGGCGTGATCTTAAATGTGGAAGACCCTAAAGACTAAACACACACAAACCTATTAGAACTAGTATATGAAGTCAACACACAGAAATCAGTTGCATATCTATACACTTAACAGTGAACAATCCTAATAGAAAATGAGGAAAACAATTTCATTTAAAATAGCATCAAAAAGAAAAAAATGCTTAGGAATTAACCAAGGAGATGAAAGACATACACTGAAAACTACAAAATACTGCTGAAAGAAAGATGTAAATAAATGGAAAGACATCACATGTTTGTAGACTGGAAAACTATTTTTTTTTTTTTTTGAAACAGAGTTTTGCTCTTTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCACCCCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGATTATAGGTGCTGCCACCACACCTGGCTAATTTTTGTATTTTTTAATAGAAACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTAGGGTTACAGATGTGAGCCACCGCACCTGGCCAGAAAACTTAATGTTAAAATAATAATACTACTCAAACCAATCTACAGAGTCAATGTAATCCCTATAAAAATAACAATTTTTTTAATAAATAGAAAAATTCATATTAAACTTGATATGGAATCTCAAGGGACACTGAATACCTAAAACAATCATGAAAGAGAACCAAGTTGGAGGACTTACAGTTCCTTATTTCAGAATTTACTACAAAGCAACAGTAACCCAAACTGTGGTACTAGCATAAAAACAGACTTACAGACTAATAGAACAGAATAGAGATCCCAGAAATAAACCCTTGCATATATGGTCAAATGATTTTTGACAAGAGTGGCAAGACCATTCAATATGAAAAAGACTATACTCAACAAACGCTATTGGGCAAACTGTATATTTATATGCTGAAGAATGAAGTTGAACCCTTACCTAACACCATATACGCAAATTAACTGAAAATGGATCGAAGACCTAAACATAAATGTGAAAACTATAAAAATTGTAGATGAAAACCTAGGCAAACATCTTTATAACTTTGGATTTGGTGATGATTTCTTGGAAATGACACCAAAACATAGGCAATAAAAGAAAAGAATAGTGAACTTGGACTTCATCAAAATTTAAAACTTTCATTCATCAAAGGAAGGGAATATATTTGCAAGTCACATATCTGATAAGGGATTAATATTTAGAATATATAAAGAACTCCTACAGCTTAACAACAATAGAAGAACGCCCCAGCTTAAAAATGGACAAAGGATTTGAATAGTCATTTTTGCAAAGATATACATGTGGCCAATAAGCACCTGAAAAGATGTTCACTATCATTCACATTAGGAAAATACAAATGAAGACCACAATGAGATACCACCTTATACCAATTAGTATGGCTATTACTTTAAAAAAAACCCAAAACTAGAAAGCAGTAAGTGTTGACAAGGTTGTGGAGAAAACAGAACCCTTGTGCATTGCGGGTGGGAATGCAAAATGGTACAGCTGCTGTGGAAAACAGTGTGGTGGTTCCTATAGAATTGCTGTTTGATCCAGTAATTCCACTTTTGAGTGTATACCCAAAAGAGCTGAAGGGACTTCAACAAATATTTATACAACCATGTGCATGGAAGAATAGCCAGAAGCTAGAAACAAACCAAATGTCTATTAACAGGTGCATAAACAAAATGTAGTATATACACACAATGGAGTATTATTTAGCCTTAACAAGGAAGTAAATTCTGAGTGCATGCTTCTACATGGCTAAATCTCGAAGACATGCTAAGCGAAATAAGTCAGACACAAAAGGACATATATGATTGCACTTATTGTAGCTACATAGAATAACCACATATATAATGGAGACAGAAAGCAAAATGGTCACTACCAGGATCTAGCGGGAGGAAAGAATGGGAAGTTATTGTTTAATAGTTACAGTGTTTCAATGTGGGATGAAAAAGTTCTGGATTCTACCAGTAGGTGGCTTTTATTCCTCCTAGGGGGCCCTCCCTGCCTACATTTTGGCTTTGTCTTCCTTTGCTCATAATGTCCTTGTCCCTGCTCCCCACATGCCTCATCTGTAGTTCCTAGCACTTTCTTCTTCCCTTGATTCCAACCCATTCTCCAAGACCAAGTTGCCATGCCCTGTCTTAGAAACCCCTTTCTAATCTCTATTCCAG
Seq C2 exon
TGTGTCCTCCATTTGGAAGTAGTGCTAAGAAAATTAAAAGAATAAAACTGGGCAGGGGCATGAGAATAGGATGCAAAGATGAATTTTTGGACTGAGTGGCCAAGAAGCTCCATGGTGAGCACTCACAGTCTAAGGCTGGAAGTTTAATGAACTGTTTTCTACATTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846-ZNF133:NM_003434:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)