HsaALTA0009735-2/2 @ hg19

Alternative 3'ss

Gene

ENSG00000125846 | ZNF133

Description

zinc finger protein 133 [Source:HGNC Symbol;Acc:12917]

Coordinates

chr20:18286942-18295816:+

Coord C1 exon

chr20:18286942-18287037

Coord A exon

chr20:18295713-18295715

Coord C2 exon

chr20:18295716-18295816

Length

3 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

3' ss Seq

TCACACTTTTCTCTCTGCAGCAG

3' ss Score

10.12

Exon sequences

Seq C1 exon

GAATTTCATTTTCTAAACCAGAACTCATCACCCAGCTGGAGCAAGGGAAAGAGACCTGGAGAGAGGAAAAAAAATGTTCACCGGCAACCTGTCCAG

Seq A exon

CAG

Seq C2 exon

ATCCAGAGCCAGAGCTCTACCTCGATCCTTTCTGCCCTCCGGGTTTCTCCAGTCAGAAATTCCCCATGCAGCATGTGCTGTGTAATCATCCCCCCTGGATC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000125846-6-12,6-11-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.424 A=NA C2=0.278

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.1),PF0009621=zf-C2H2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)

Main Inclusion Isoform:

ENSP00000400897