HsaALTA1013789-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29122274-29126579:+
Coord C1 exon
chr7:29122274-29122642
Coord A exon
NA
Coord C2 exon
chr7:29126413-29126579
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TAGATGCTATTTTCCATTAGCTC
3' ss Score
3.02
Exon sequences
Seq C1 exon
GGGCCAGTGGGAATTTATAGCCAAGGAGCAGTGTGGGGGTCAGTGGATGGAAAATTACTCAAAGGAAGCGTTGGGGTAAGGTGGATCTGGCTAAACCTAACAGGATTCTCACTGAAGACAGGCCAGGGTGATCAGACATCACCTGGGGGATGGTGCAGGATGAGAAACCTGGTCAGACATTGAGGCGATCGGATGTTGATGTTGCTGGTTCTTGGTAAAACGACTTAGCTAGTGTCCTTTGCTAAAACTGGATTTTACAAGGACGTGCACAAACAGGCCTAGCAGGAGATTCAGAAGCCTGACTAAAATTTGGCCAAGGAAAAAAATCCTTGTCACCAGGAAAGTGAGGACTATTGTCACCAAATTCAG
Seq A exon
NA
Seq C2 exon
CTCACACTCCAATTCCAATCGACCTGACCATCAGAAGAGACAAAAAGGGAAAATCCTGGCCAGTTCTCCCCTACCTGATCAACCAGTAGCATAATCAGATTTGCAAGACCTCAAGAAAAGAAACCTGAAAATGCCACTGGAGGTGTGTGTTTTGCCAAAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-0-5,0-4,0-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAACAGGCCTAGCAGGAG
R:
ATCAGGTAGGGGAGAACTGGC
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains