HsaALTD0001656-1/5 @ hg38
Alternative 5'ss
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr7:29120893-29146497:-
Coord C1 exon
chr7:29146429-29146497
Coord A exon
NA
Coord C2 exon
chr7:29120893-29121071
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
3' ss Seq
GAATGCTGTTTTTATCCTAGACC
3' ss Score
6.74
Exon sequences
Seq C1 exon
AGCGCTGCAAGGACAACCGGCTGGGGTCCTTGCGCGCCGCGGCTCAGGGAGGAGCACCGACTGCGCCGC
Seq A exon
NA
Seq C2 exon
ACCCTGAGAGATGGTTGGTGCCATGTGGAAGGTGATTGTTTCGCTGGTCCTGTTGATGCCTGGCCCCTGTGATGGGCTGTTTCGCTCCCTATACAGAAGTGTTTCCATGCCACCTAAGGGAGACTCAGGACAGCCATTATTTCTCACCCCTTACATTGAAGCTGGGAAGATCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-7-17,8-17,9-17,10-17,11-17-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGGAGCACCGACTG
R:
TCTCCCTTAGGTGGCATGGAA
Band lengths:
148-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains