HsaEX7004107 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29126329-29128150:+
Coord C1 exon
chr7:29126329-29126626
Coord A exon
chr7:29126856-29126939
Coord C2 exon
chr7:29128014-29128150
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTATTTATTTAAGGGA
3' ss Score
6.82
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACTGCCAATTGTTAAACATTTACCTGCACATACTGGGCTCATCTTCATTATTGGTAAAATGAGCTAGATGCTATTTTCCATTAGCTCACACTCCAATTCCAATCGACCTGACCATCAGAAGAGACAAAAAGGGAAAATCCTGGCCAGTTCTCCCCTACCTGATCAACCAGTAGCATAATCAGATTTGCAAGACCTCAAGAAAAGAAACCTGAAAATGCCACTGGAGGTGTGTGTTTTGCCAAAGAAAAAAGAATCAAAAACAAAACCTGCAGGATGAGGACAAACAAACAAAGAGCAG
Seq A exon
GGACAGAGTCTCACTATGTTGACACCCTGGACAACACTCTTGAAGTACTCTTTTCCCAGGGAGGACACAGTCATGGCATGCAAG
Seq C2 exon
GGGCTCAGCCATGAACCTTGTGATGGATGAGGAAAAGATATTCTTTTTCTCCCCTTACAGTTTCTGGCAGCCAACATGGGGTGGCTGTGACACCCCACTAGTTCCAGAACCTGCAGATGAGATCCTGGGACAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-'3-9,'3-6,4-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTTCTCCCCTACCTGAT
R:
TCACAAGGTTCATGGCTGAGC
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains