HsaEX1008738 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29122453-29146223:+
Coord C1 exon
chr7:29122453-29122642
Coord A exon
chr7:29127407-29127410
Coord C2 exon
chr7:29145854-29146223
Length
4 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTATTTCTAACCAGGAA
3' ss Score
9.18
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTGAGGCGATCGGATGTTGATGTTGCTGGTTCTTGGTAAAACGACTTAGCTAGTGTCCTTTGCTAAAACTGGATTTTACAAGGACGTGCACAAACAGGCCTAGCAGGAGATTCAGAAGCCTGACTAAAATTTGGCCAAGGAAAAAAATCCTTGTCACCAGGAAAGTGAGGACTATTGTCACCAAATTCAG
Seq A exon
GAAG
Seq C2 exon
GGAGCTGCTTCCACCTGTCTCCTGTGCCCTTGGTTTCTGCTAATCCTACATTCCAAGAATAAAAGTCTTCCTATGCGTTCCTAGGCAGAAGCCAAGTTTCCCTGCTTTGGGCACGTTCAAAATAGAAGGTATTTTCCGCTTCTCTTGCTTCTGAGCACCCACGAAATCAACACATCCCCAAAACACGCGTTGAGGGAGTAAGGGAAAGTGTCCTGCACCCGCCACCCTCCCGCGCTAAGAGCGGCAGAGGACCCCACAGCTTCGTACTTCCCCGGAGGAGCTCCTGGAGTAGGAGACGGCTTCTAGCCTGGAAGAACCCCGGGTGCGACAGTTGTGCCAGGAAACTTCAAGAGTATTCCCTCGGCTGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGATTCAGAAGCCTGA
R:
AGACAGGTGGAAGCAGCTCC
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains