HsaALTA1036700-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000154479 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:169665004-169674769:-
Coord C1 exon
chr2:169674576-169674769
Coord A exon
chr2:169665053-169665168
Coord C2 exon
chr2:169665004-169665052
Length
116 bp
Sequences
Splice sites
5' ss Seq
ACAGTATGT
5' ss Score
6.05
3' ss Seq
TTGGCCCTACATCTGTACAGGCT
3' ss Score
4.51
Exon sequences
Seq C1 exon
TCGGGACTTCTTCTTAGTAGAGTTATGAAAGAACGTGATGCCCAGATTGAATTCCGAAAGAGTAAGATAAAATCAGATAAAAAATGGGAGGAACAGTTGAAACTCAACATTGAAAAAGCTTTTAAAGAAGAACAAGAAAAAGCAGAAAAACGACACAGAGAAAGGGTGGCTCTTGCCAAAGATCATCTAAAACA
Seq A exon
GCTGATAAGAAGGCTCCTGGAACTCTCCTCCTCCTCTTTTGGCACAAGTGCTTAATTTAAATCCCTCCTGCTCAGAAACTTTTCCTCAGTCCCACTTCCCTCTGCTTTGTCCAAAG
Seq C2 exon
CAATCAAGACCTACTTGTGCCTGCCCAGCTCTTCCCAGGAGTCCCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479-9-17,9-16,9-15-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(19.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGACTTCTTCTTAGTAGAGT
R:
GACTCCTGGGAAGAGCTGGG
Band lengths:
237-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains