HsaEX1007355 @ hg38
Exon Skipping
Gene
ENSG00000154479 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:169662280-169674769:-
Coord C1 exon
chr2:169674576-169674769
Coord A exon
chr2:169665004-169665208
Coord C2 exon
chr2:169662280-169662436
Length
205 bp
Sequences
Splice sites
3' ss Seq
ACTACTGACTTCTTTTTTAGGCC
3' ss Score
9.87
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TCGGGACTTCTTCTTAGTAGAGTTATGAAAGAACGTGATGCCCAGATTGAATTCCGAAAGAGTAAGATAAAATCAGATAAAAAATGGGAGGAACAGTTGAAACTCAACATTGAAAAAGCTTTTAAAGAAGAACAAGAAAAAGCAGAAAAACGACACAGAGAAAGGGTGGCTCTTGCCAAAGATCATCTAAAACA
Seq A exon
GCCTCACCCTCACTTCCCTTTTGGCCCTACATCTGTACAGGCTGATAAGAAGGCTCCTGGAACTCTCCTCCTCCTCTTTTGGCACAAGTGCTTAATTTAAATCCCTCCTGCTCAGAAACTTTTCCTCAGTCCCACTTCCCTCTGCTTTGTCCAAAGCAATCAAGACCTACTTGTGCCTGCCCAGCTCTTCCCAGGAGTCCCTCAT
Seq C2 exon
AATAAAGGAACATGAGGAAGAAGAGGAAAGAAGGAAAAAATATGAAGAAAAAGATGCTGAGGAAATAAAGCGACAGAATGCATTATATGAAATTGAAATGAGAAAAAAACTAGAAAAGAAAAGAGAAGAGATGCATGAAAGCAGGAGACGGTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.394 C2=0.535
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(19.0=100)
A:
NO
C2:
PF138681=Trichoplein=FE(15.5=100)
Main Inclusion Isoform:
ENST00000447353fB11521
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGATTGAATTCCGAAAGA
R:
CCGTCTCCTGCTTTCATGCAT
Band lengths:
307-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains