HsaALTA1039909-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000162687 | KCNT2
Description
potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr1:196315892-196326889:-
Coord C1 exon
chr1:196326717-196326889
Coord A exon
chr1:196316022-196316026
Coord C2 exon
chr1:196315892-196316021
Length
5 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TCTGTTGATTTTTATCAAAGCCT
3' ss Score
2.98
Exon sequences
Seq C1 exon
AGTTGCCAACATAACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGATTATATAACTTTATTGTTCCTCTCAGGGCATATTATAGACCAAAGAAAGAACTTAATCCCATAGTACTGCTATTGGATAACCC
Seq A exon
CCTAG
Seq C2 exon
ATGACTTACTCAGGTGTGGAGTGACTTTTGCTGCTAATATGGTGGTTGTGGATAAAGAGAGCACCATGAGTGCCGAGGAAGACTACATGGCAGATGCCAAAACCATTGTGAACGTGCAGACACTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687-32-43,32-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTATTGTTCCTCTCAGGGCA
R:
GCAAAAGTCACTCCACACCTGA
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains