RnoALTA0020295-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57426539-57429680:+
Coord C1 exon
chr13:57426539-57426610
Coord A exon
chr13:57429546-57429550
Coord C2 exon
chr13:57429551-57429680
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
TTTTCGGATTTTTATCAAAGCCT
3' ss Score
2.37
Exon sequences
Seq C1 exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
Seq A exon
CCTAG
Seq C2 exon
ATGATTTGCTCAGGTGTGGAGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-31-34,31-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGTGGGCTCTATTGACA
R:
AGTCTTCCTCTGCACTCATGGT
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]