GgaALTA1017171-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2767066-2772717:+
Coord C1 exon
chr8:2767066-2767238
Coord A exon
chr8:2772583-2772620
Coord C2 exon
chr8:2772621-2772717
Length
38 bp
Sequences
Splice sites
5' ss Seq
CCCGTATGT
5' ss Score
5.55
3' ss Seq
CCTCTTTCTCTTCACAAAAGCCT
3' ss Score
3.93
Exon sequences
Seq C1 exon
GGGTGCCAGCATAACTACTATGAAGATGCCAAAGCCTATGGATTCAAAAATAAATTGATTATTGTTGCAGCAGAAACTGCTGGAAATGGCTTATATAATTTTATTGTTCCACTTAGAGCTTATTACAGACCGAAGAAAGAACTCAATCCCATTGTATTACTCCTGGATAACCC
Seq A exon
CCTAGATGACTTATTAAGATGTGGGGTCACCTTTGCAG
Seq C2 exon
CTAATATGGTGGTGGTGGACAAAGAAAGTACAATGAGTGCTGAGGAAGACTACATGGCAGATGCTAAGACTATTGTAAACGTTCAAACACTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-29-37,29-36,29-35-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTGCTGGAAATGGCTT
R:
TTCTTTGTCCACCACCACCAT
Band lengths:
128-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]