GgaEX0003081 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2767066-2772717:+
Coord C1 exon
chr8:2767066-2767238
Coord A exon
chr8:2769362-2769433
Coord C2 exon
chr8:2772583-2772717
Length
72 bp
Sequences
Splice sites
3' ss Seq
TAATCCCATCTGCTGCTTAGGCC
3' ss Score
3.21
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGGTGCCAGCATAACTACTATGAAGATGCCAAAGCCTATGGATTCAAAAATAAATTGATTATTGTTGCAGCAGAAACTGCTGGAAATGGCTTATATAATTTTATTGTTCCACTTAGAGCTTATTACAGACCGAAGAAAGAACTCAATCCCATTGTATTACTCCTGGATAACCC
Seq A exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATCGACAA
Seq C2 exon
CCTAGATGACTTATTAAGATGTGGGGTCACCTTTGCAGCTAATATGGTGGTGGTGGACAAAGAAAGTACAATGAGTGCTGAGGAAGACTACATGGCAGATGCTAAGACTATTGTAAACGTTCAAACACTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAACTGCTGGAAATGGCT
R:
TTTCTTTGTCCACCACCACCA
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]