BtaEX0018899 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6568363-6581184:+
Coord C1 exon
chr16:6568363-6568535
Coord A exon
chr16:6577323-6577394
Coord C2 exon
chr16:6581050-6581184
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTAACCCATGTGCTACTTAGGCC
3' ss Score
3.97
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
AGTTGCCAGCATAACTACTATGAGGACGCAAAAGCCTATGGATTCAAAAATAAGCTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGATTGTATAATTTTATTGTTCCTCTCAGGGCTTATTATAGACCAAAGAAAGAACTTAATCCCGTAATACTGCTATTGGATAACCC
Seq A exon
GCCAGACATGCATTTTCTGGATGCCATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
Seq C2 exon
CCTCGATGATTTACTCAGGTGTGGAGTGACTTTTGCTGCCAACATGGTGGTCGTGGACAAAGAAAGCACCATGAGCGCCGAGGAAGACTACATGGCGGACGCCAAAACCATCGTCAACGTGCAGACCCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'22-24,'22-22,23-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACGCAAAAGCCTATGG
R:
CCACACCTGAGTAAATCATCGAGG
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development