BtaEX0018898 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6561581-6577394:+
Coord C1 exon
chr16:6561581-6561686
Coord A exon
chr16:6568363-6568535
Coord C2 exon
chr16:6577323-6577394
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTATAATTTTTCTTCTCTAGAGT
3' ss Score
8.57
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATATGCTAAAGGCTACCCACCTTACTCTCCATACATAGGAAGTTCACCCACTTTTTGTCATCTCCTTCATGAAAAAGTACCATTTTGCTGCTTAAGACTAGACAAG
Seq A exon
AGTTGCCAGCATAACTACTATGAGGACGCAAAAGCCTATGGATTCAAAAATAAGCTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGATTGTATAATTTTATTGTTCCTCTCAGGGCTTATTATAGACCAAAGAAAGAACTTAATCCCGTAATACTGCTATTGGATAACCC
Seq C2 exon
GCCAGACATGCATTTTCTGGATGCCATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'21-22,'21-21,22-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCTAAAGGCTACCCACCT
R:
TTGTCAATAGAGCCCACCATGT
Band lengths:
178-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development