MmuEX0025182 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140518866-140553071:+
Coord C1 exon
chr1:140518866-140518971
Coord A exon
chr1:140523088-140523260
Coord C2 exon
chr1:140552960-140553071
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGTATAATTTTCTCCTCTAGAGT
3' ss Score
9.53
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTATGCCAAAGGCTACCCACCTTATTCCCCATACATAGGAAGTTCACCTACTTTTTGTCACCTACTTCAAGAAAAAGTGCCATTTTGCTGCTTAAGATTAGACAAG
Seq A exon
AGTTGCCAGCATAACTACTATGAGGACGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGACTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGAAAGAATTAAATCCCATAGTTCTGCTATTGGATAACCC
Seq C2 exon
GTTGTTTTCAAGTCTCAGTATCATCACTGAGCTTACGCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGATTGTTACTCTCTCGCGCTTTCAAAACTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX3-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGGCTACCCACCTTAT
R:
TCCAGTTTTGAAAGCGCGAGA
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types