DreEX0005331 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64883330-64893534:+
Coord C1 exon
chr5:64883330-64883435
Coord A exon
chr5:64885963-64886135
Coord C2 exon
chr5:64893451-64893534
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCTTGTGTTTTACAGGGT
3' ss Score
10.7
5' ss Seq
TCCGTGAGC
5' ss Score
4.32
Exon sequences
Seq C1 exon
CTGTGTTAAAGGCTATCCTCCAAACTCCCCTTACATTGGAAGCTCTCCAACACTTTGCCACCTTCTTCAACAGAAGGCACCGTTTTGCTGTCTACGACTTGACAAG
Seq A exon
GGTTGTCGACACAATAGTTTCGAAGACGCCAAGGCGTATGGTTTCAAGAACAAGTTGATTATCGTTTCTGCTGAGACAGCGGGAAATGGCTTGTACAACTTCATAGTGCCGTTACGTGCCTATTACCGACCGCGGAAGGAGCTGAATCCCATTGTGCTGCTGCTGGATAATCC
Seq C2 exon
TCGTTTGTGAAGGACTATATGATTCTCATTGCGCGGCTCCTCCTGGGTTTAGACACCACCCCGGGCTCAGGATACCTCTGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868_MULTIEX1-1/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAAAGGCTATCCTCCAAACTCCC
R:
AGCACAGAGGTATCCTGAGCC
Band lengths:
186-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]