BtaEX6047087 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103424136-103426824:+
Coord C1 exon
chr11:103424136-103424241
Coord A exon
chr11:103426210-103426382
Coord C2 exon
chr11:103426753-103426824
Length
173 bp
Sequences
Splice sites
3' ss Seq
CCAGCGTTCTCCCCTTCCAGGGC
3' ss Score
10.99
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTATGTGAAGGGCTACCCTCCTAACTCACCCTACATCGGCAGCTCCCCAACCCTGTGCCATCTCCTGCCCGTGAAAGCCCCCTTCTGCTGCCTGCGGCTGGACAAG
Seq A exon
GGCTGCAAGCACAACAGCTACGAAGATGCCAAGGCCTATGGCTTCAAGAACAAGCTGATCATCGTCTCAGCGGAGACGGCGGGCAACGGGCTGTACAACTTCATCGTGCCGCTGCGCGCCTACTACCGGCCTCGCCGGGAGCTCAACCCCATTGTGCTGCTGCTGGACAACAA
Seq C2 exon
GCCCGACCACCACTTCCTGGAGGCCATCTGCTGCTTTCCCATGGTCTACTACATGGAGGGCTCCGTGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'31-27,'31-26,32-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCCTCCTAACTCACCC
R:
TTGTCCACGGAGCCCTCC
Band lengths:
168-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]