GgaEX0001934 @ galGal4
Exon Skipping
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8219458-8220047:-
Coord C1 exon
chr17:8219942-8220047
Coord A exon
chr17:8219693-8219865
Coord C2 exon
chr17:8219458-8219529
Length
173 bp
Sequences
Splice sites
3' ss Seq
CAGCTGCCTCCCTCCCACAGGGC
3' ss Score
10.78
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
Exon sequences
Seq C1 exon
GTACGTGAAGGGCTACCCACCCAACTCCCCGTACATCGGCAGCTCGCCAACCCTATGCCACCTCTTGCCTGAGAAAGCCCCATTCTGCTGCCTGCGGCTGGACAAG
Seq A exon
GGCTGCAAGCACAACAGCTTTGAAGATGCCAAAGCCTATGGCTTTAAGAACAAGTTGATCATCGTGTCGGCAGAGACTGCAGGCAATGGGCTGTATAACTTCATCGTCCCACTGCGTGCCTACTATCGGTCTCGCAAAGAGTTGAACCCAATTGTGTTGCTTCTGGACAACAA
Seq C2 exon
ACCAGAGCACCACTTTCTGGAAGCCATCTGTTGTTTCCCCATGGTTTACTACATGGAAGGCACCATTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCAACTCCCCGTACATC
R:
TTGTCAATGGTGCCTTCCATGT
Band lengths:
162-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]