RnoEX0046237 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57411382-57426610:+
Coord C1 exon
chr13:57411382-57411487
Coord A exon
chr13:57418872-57419044
Coord C2 exon
chr13:57426539-57426610
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTGTAATTTTCCTTCTCTAGAGT
3' ss Score
8.82
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GTATGCCAAAGGCTACCCACCTTATTCTCCATACATAGGAAGTTCACCTACTTTTTGTCATCTACTTCAAGAAAAAGTGCCCTTTTGCTGCTTAAGATTAGACAAG
Seq A exon
AGTTGCCAGCATAACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAACGGCTGGGAACGGATTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGAAAGAATTAAATCCCATAGTTCTTCTATTGGATAATCC
Seq C2 exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'27-32,'27-31,30-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGGCTACCCACCTTAT
R:
TGTCAATAGAGCCCACCATGT
Band lengths:
173-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]