DreEX0041028 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4726687-4729161:-
Coord C1 exon
chr21:4729056-4729161
Coord A exon
chr21:4726845-4727017
Coord C2 exon
chr21:4726687-4726758
Length
173 bp
Sequences
Splice sites
3' ss Seq
CATACTTGTTTCTGTTGTAGAGC
3' ss Score
9.16
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
TTTTGTGAAAGGTTATCCCCCGAACTCTCCATATATTGGGAGCTCTCCAACCCTTTGCCATCTTTTACCTCAGAAAGCCCCTTTCTGCTGTTTACGGCTTGACCAG
Seq A exon
AGCTGTGAGCATGTTTCCTTTGAAGACGCAAAAGCATACGGCTTCAAAAATAAATTAATTATCGTTTCTGCGGAGACGGCTGGAAACGGCCTTTACAACTTCATAGTGCCTTTAAGAGCCTATTACAGGCCCAGAAGAGAACTCAACCCTATAGTCCTGCTGTTAGACAACCT
Seq C2 exon
ACCCGATGACCACTTCCTTGAGGCCATATCCTGCTTCCCAATGGTGTATTATATGGGTGGCACCATTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-'22-26,'22-25,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTGAAAGGTTATCCCCCGA
R:
TTGTCAATGGTGCCACCCATA
Band lengths:
178-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]