MmuEX0025182 @ mm9
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142415443-142449648:+
Coord C1 exon
chr1:142415443-142415548
Coord A exon
chr1:142419665-142419837
Coord C2 exon
chr1:142449537-142449648
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGTATAATTTTCTCCTCTAGAGT
3' ss Score
9.53
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTATGCCAAAGGCTACCCACCTTATTCCCCATACATAGGAAGTTCACCTACTTTTTGTCACCTACTTCAAGAAAAAGTGCCATTTTGCTGCTTAAGATTAGACAAG
Seq A exon
AGTTGCCAGCATAACTACTATGAGGACGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGACTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGAAAGAATTAAATCCCATAGTTCTGCTATTGGATAACCC
Seq C2 exon
GTTGTTTTCAAGTCTCAGTATCATCACTGAGCTTACGCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGATTGTTACTCTCTCGCGCTTTCAAAACTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX3-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGGCTACCCACCTTAT
R:
TCCAGTTTTGAAAGCGCGAGA
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: