GgaEX7006674 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2766694-2769433:+
Coord C1 exon
chr8:2766694-2766799
Coord A exon
chr8:2767066-2767238
Coord C2 exon
chr8:2769362-2769433
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCATTTTAATTTTAGGGG
3' ss Score
8.81
5' ss Seq
CCCGTATGT
5' ss Score
5.55
Exon sequences
Seq C1 exon
GTATGCCAAGGGCTATCCTCCTTACTCTCCTTATATTGGAAGTTCTCCCACATTTTGTCATCTTCTGCATGAAAAAGTACCCTTCTGTTGTCTAAGACTAGATAAG
Seq A exon
GGGTGCCAGCATAACTACTATGAAGATGCCAAAGCCTATGGATTCAAAAATAAATTGATTATTGTTGCAGCAGAAACTGCTGGAAATGGCTTATATAATTTTATTGTTCCACTTAGAGCTTATTACAGACCGAAGAAAGAACTCAATCCCATTGTATTACTCCTGGATAACCC
Seq C2 exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATCGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'28-34,'28-31,29-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTATCCTCCTTACTCTCCT
R:
TCGATAGAGCCCACCATGTAGT
Band lengths:
166-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]