RnoEX0046245 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57418872-57429680:+
Coord C1 exon
chr13:57418872-57419044
Coord A exon
chr13:57426539-57426610
Coord C2 exon
chr13:57429546-57429680
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTAACCCATCTGCTACATAGGCC
3' ss Score
4.66
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
AGTTGCCAGCATAACTACTATGAGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAACGGCTGGGAACGGATTATATAATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGAAAGAATTAAATCCCATAGTTCTTCTATTGGATAATCC
Seq A exon
GCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAA
Seq C2 exon
CCTAGATGATTTGCTCAGGTGTGGAGTGACCTTCGCTGCCAACATGGTGGTTGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGGCTGGGAACGGATTA
R:
GCTTTCTTTGTCCACAACCACC
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]