HsaALTA1042826-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8698933-8699390:-
Coord C1 exon
chr11:8699213-8699390
Coord A exon
NA
Coord C2 exon
chr11:8698933-8698974
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
CTAATGACTCCTTTTCTCAGGCG
3' ss Score
6.52
Exon sequences
Seq C1 exon
TACCCTCTCCAGCTGCTCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCATGATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGAGGAG
Seq A exon
NA
Seq C2 exon
GCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-126-108,126-106,126-105-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
NA
C2:
PF0214116=DENN=PD(4.3=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCTCTCCAGCTGCTCC
R:
GTCGGATGAATCGGTCAGATCC
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains