RnoALTA0038771-1/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174140368-174140807:-
Coord C1 exon
chr1:174140630-174140807
Coord A exon
NA
Coord C2 exon
chr1:174140368-174140409
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGCCTCTGACCCTTTCCCAGGCA
3' ss Score
7.61
Exon sequences
Seq C1 exon
TACCCTGTCCAGCTGCTCTCATGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCAGCCTCCATGATTGACATTGTCTGCTGTCCCACCCCTTTCCTGGTTGGCCTGCTCTCCAGCTCCCTTCCCAAACTGAAGGAGCTGCCTGTGGAAGAG
Seq A exon
NA
Seq C2 exon
GCACTGATGGTGAATCTAGGATCTGACCGATTCATCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934-44-44,44-43,44-42,44-41-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
NA
C2:
PF0214116=DENN=PD(4.3=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTCTACCCCTTCTCCTGG
R:
TCGGATGAATCGGTCAGATCCT
Band lengths:
183-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]