MmuALTA1022277-1/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109527344-109527791:-
Coord C1 exon
chr7:109527614-109527791
Coord A exon
NA
Coord C2 exon
chr7:109527344-109527385
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGCTTCTGACCCTTTCCCAGGCA
3' ss Score
7.33
Exon sequences
Seq C1 exon
TACCCTGTCCAGCTGCTCTCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACATTCATTCCTGTCCTCCCAGCCTCCATGATTGACATTGTCTGCTGTCCCACCCCTTTCCTGGTTGGCCTGCTCTCCAGCTCCCTTCCCAAACTGAAGGAGCTGCCTGTGGAAGAG
Seq A exon
NA
Seq C2 exon
GCACTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024-60-55,60-54,60-53,60-52-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
NA
C2:
PF0214116=DENN=PD(4.3=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCAGCACACATTCAT
R:
CGGATGAATCGGTCAGATCCC
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types