HsaALTA1044162-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000168280 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
Coordinates
chr2:148997264-148998509:+
Coord C1 exon
chr2:148997264-148997340
Coord A exon
chr2:148998400-148998402
Coord C2 exon
chr2:148998403-148998509
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TCTCTTGGCCTGGGATGCAGAAG
3' ss Score
2.41
Exon sequences
Seq C1 exon
AAAAAATGCACGAAGTCAGCTTCCAGGATAAGGAGAAGGAACATCTGACGCGGTTGCAGGATGCTGAAGAAATGAAG
Seq A exon
AAG
Seq C2 exon
GCGCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCTCACCAGAAGCAGCTGTCCAGACTCCGAGACGAAATTGAGGAGAAGCAGAAAATCATTGATGAGATTCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168280-47-36,47-35-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAACATCTGACGCGGTT
R:
GAGTCTGGACAGCTGCTTCTG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains