RnoALTA0020698-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004680 | Kif5c
Description
kinesin family member 5C [Source:RGD Symbol;Acc:1308539]
Coordinates
chr3:35220388-35221074:+
Coord C1 exon
chr3:35220388-35220464
Coord A exon
chr3:35220965-35220967
Coord C2 exon
chr3:35220968-35221074
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTCCTGGCCTGGCTTGCAGAAG
3' ss Score
7.53
Exon sequences
Seq C1 exon
AAAAAATGCACGAAGTCAGTTTCCAAGATAAGGAAAAGGAGCACCTGACGAGGCTGCAGGATGCTGAGGAAGTGAAG
Seq A exon
AAG
Seq C2 exon
GCTCTGGAGCAGCAGATGGAGAGTCACCGGGAAGCGCACCAAAAGCAGCTGTCCAGACTTCGTGATGAGATTGAGGAGAAGCAGAGAATCATTGATGAGATTCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004680-38-32,38-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGATGCTGAGGAAGTG
R:
TCATCACGAAGTCTGGACAGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]