MmuALTA1015845-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026764 | Kif5c
Description
kinesin family member 5C [Source:MGI Symbol;Acc:MGI:1098269]
Coordinates
chr2:49741333-49742048:+
Coord C1 exon
chr2:49741333-49741409
Coord A exon
chr2:49741939-49741975
Coord C2 exon
chr2:49741976-49742048
Length
37 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTCCTGGCCTGGCTTGCAGAAA
3' ss Score
8.29
Exon sequences
Seq C1 exon
AAAAAATGCACGAAGTCAGTTTCCAAGATAAGGAAAAGGAGCACCTGACGAGGCTGCAGGATGCTGAGGAGGTGAAG
Seq A exon
AAAGCTCTGGAGCAGCAGATGGAGAGCCACCGGGAAG
Seq C2 exon
CGCACCAAAAGCAGCTGTCCAGACTTCGCGATGAGATTGAGGAGAAGCAGAGAATCATTGATGAGATCCGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026764-46-32,46-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACGAAGTCAGTTTCCAAGA
R:
GCTTCTCCTCAATCTCATCGCG
Band lengths:
119-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types