HsaALTA1049433-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000180479 | ZNF571
Description
zinc finger protein 571 [Source:HGNC Symbol;Acc:HGNC:25000]
Coordinates
chr19:37583971-37586745:-
Coord C1 exon
chr19:37586668-37586745
Coord A exon
chr19:37584081-37584097
Coord C2 exon
chr19:37583971-37584080
Length
17 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TAATGGATTTGTTGTTTCAGTTG
3' ss Score
6.18
Exon sequences
Seq C1 exon
CACTGGCTTCTCTGGACTTTGCACACCTCCAGGAGAAGAACCCAGAAAATTGATCAGTTCTAAAAAACCATGCCCCAC
Seq A exon
TTGTTGGTGACTTTCAG
Seq C2 exon
GGATGTGGCCATTGACTTCTCTCAGGAGGAATGGGAATGCCTGGACCCTGCTCAGAGGGACTTGTACAGGGATGTGATGTTGGAGAACTACAGCAACCTGATCTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180479-5-6,5-5,5-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACACCTCCAGGAGAAGA
R:
AGGCATTCCCATTCCTCCTGA
Band lengths:
102-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains