HsaEX0073975 @ hg38
Exon Skipping
Gene
ENSG00000180479 | ZNF571
Description
zinc finger protein 571 [Source:HGNC Symbol;Acc:HGNC:25000]
Coordinates
chr19:37564264-37586745:-
Coord C1 exon
chr19:37586668-37586745
Coord A exon
chr19:37583971-37584097
Coord C2 exon
chr19:37564264-37566291
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAATGGATTTGTTGTTTCAGTTG
3' ss Score
6.18
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CACTGGCTTCTCTGGACTTTGCACACCTCCAGGAGAAGAACCCAGAAAATTGATCAGTTCTAAAAAACCATGCCCCAC
Seq A exon
TTGTTGGTGACTTTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAATGGGAATGCCTGGACCCTGCTCAGAGGGACTTGTACAGGGATGTGATGTTGGAGAACTACAGCAACCTGATCTCATTGG
Seq C2 exon
ACTTGGAATCCAGTTGTGTGACCAAAAAGTTATCTCCAGAAAAGGAAATTTATGAAATGGAATCACTCCAGTGGGAGAATATGGGGAAACGTATCAACCATCACCTTCAATACAATGGTCTTGGAGACAATATGGAGTGCAAAGGCAACTTAGAGGGTCAAGAAGCAAGTCAGGAAGGGCTTTACATGTGTGTCAAAATTACCTGTGAAGAAAAGGCCACTGAAAGTCATTCAACCTCTTCTACTTTTCATCGGATAATTCCTACCAAGGAAAAATTGTACAAATGTAAGGAATGCAGACAAGGTTTCAGCTACCTGTCATGCCTTATTCAACATGAGGAAAATCATAATATAGAAAAATGCTCTGAAGTTAAGAAACACAGGAATACCTTTAGCAAAAAGCCAAGCTATATTCAACATCAGAGAATTCAGACTGGTGAGAAACCTTATGAGTGTATGGAATGTGGAAAGGCCTTTGGTCGTACTTCTGATCTCATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180479_MULTIEX1-3/4=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACACCTCCAGGAGAAGA
R:
AAGCCCTTCCTGACTTGCTTC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development