HsaINT1047559 @ hg38
Intron Retention
Gene
ENSG00000267470 | ZNF571-AS1
Description
ZNF571 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44324]
Coordinates
chr19:37583483-37587348:+
Coord C1 exon
chr19:37583483-37583834
Coord A exon
chr19:37583835-37585338
Coord C2 exon
chr19:37585339-37587348
Length
1504 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TACTTTGCTTGACTTTGTAGATT
3' ss Score
7.91
Exon sequences
Seq C1 exon
CCTTCTTTCCACAGGCCTTTGAAGAGAGCTTCAGGCACACACCTCAAAGTGCTGCCACCTACGGATCAGCTGTATTATTAGCAATAGCTGACACTGTGACCAGCCTTTATTCACCTGAGCTCTGTCTTTATGTCATGGTTCTCATCAGCATCCAGGGCTCCTTTCCTTGCTCCAGTAAGGAAAGTATATTTGGCTTAGGGACTGCACATACAGCTTAAAAGAAAGGAAATGGTGCATGGTCATGCTAGGGGATTCCCAGATTCAAATCTAGTCCATTGGCATCAAAGAAGGGAGACACTGACAGGAAGTGACAGAGAAAGATGTGACAGTCTAAAGGATAAGAGATAAAAAG
Seq A exon
GTACACGGTGGAGCTGTCCATTTCTACTTCTACTCAAACGTAAGCCTTTCCTTAGGGAATGGAGATCAGAAATTCACAATGAATGAGGCAGAAATTATGGGGAACAAATTCTGAATATTACGTAGGATGATCTTACCCAATGAGATCAGGTTGCTGTAGTTCTCCAACATCACATCCCTGTACAAGTCCCTCTGAGCAGGGTCCAGGCATTCCCATTCCTCCTGAGAGAAGTCAATGGCCACATCCCTGAAAGTCACCAACAACTGAAACAACAAATCCATTACAGGATGATTCTACAGGAATGATTCTGAAGTGAAATGAGAAGAAAATGGAGGAGGTAATTGAAGGAAGCAAGTAACACAAAACAACAGGAAATTGGTTGCCTAAACAGTAGTATTAACCTGATTCTCTATCATTCCTATTGCCACAGATAAAACTTCCTCTGTACAATAGAACAATTCCATTATCCAGAAAGGTCTGAGAATTTAAAAAGCCAGATGTGTGCAGTTTCTTGATTAAAGAAAATACTGCAAGCGTTTTCTTCACAACAGGTTTTAATTGCACAGCAGATAAGGCTTCCAAATCCTCAATAACTAATATACTCTCAATTAATACAAGTTCTTGCTCTCCCTTCTGCCTTTAAATACTTTTAAAAAGATGAATTTTTTTCCAAACAATGTTTACCAAATCTCTAGGTTAGAAAATAAAATTTGAATATAACCTAAGAATTTTTTGAAGACTCAGATTCATCAAGTTATATTATGTCACAGAACAGAATGGACATATTTCCATTTTACATACAAAATGATCTGCTTATTTGGGAGTATCTGAATTAGACAAATTCTCGGCCGGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTGATGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCTGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGGAATTAGACAAATTCTCTAATGTCTTTGAGCTCTTAGAATCTATAATTCTTGAGAGTATGCATCTGGCATGTTTTATTTGCTCCTATTTTCCACGTTCCTAGGCTATAGCAAGGTACTGGATGCCAGTCCAGGCACACAGAGACATCACTCTGAACTGGTACATTCCGGGAAATCCCAAGGTGAACTTGACTATGATCATCCTCTCTCATTGGTTCCTGGGCAAGAGGGTTGTAGAAGGCAGAATAAAGGCCCCCCAAACATGTCCACAACCTAATCCCTGAAACAGTAACAGTACTGACTCAATGATAAAGAAAAGCTTGCTTGCTTAAATATAATTACTTTGCTTGACTTTGTAG
Seq C2 exon
ATTATTCAGTAAGAACAGTCTCAGGAAAACAGGACCTTCAACAGAGATAAGAGAATTAAAATATGCAGACTAACAACTCTGGGAATGGGCTGACCAGCCTGATAAGAATAGGCTGATGGCACCTACAGAAGGCCACAAAACACTGACCAAGAAAGCAATGACCAACAAAGCAATGACCTGAGACTGCACATTTCACAAGAATGTTTTGATCATCATTTTTTCTAATTTCCCTTAAAAACCCCTGATATGGAGACAGAACTCGGCGGTCTTTGAACACTAGTTCACTGCCTCCCCTGGGTTGTTGGATTCCTGAATAGAGCTAACCATCCTTTCACCAATGCTCATCTCTTAAACTTTCAAGTGACAAGTGGTCTGGACCTGAATTTCGTTACAAAACCTATGTATACCTTACCTTACATGGCAAAGGGGACTTTAGAAGTGCAATTAAATTAAGGATCTTGAGAGGGGGTTATCCTGGATTATCTGGTTGGGCCCAATGTATTTGTAAGTGATAGAGGGAGGCAGGTGAGTAAAAAAAGGAAACGTGATGATGAAAGCACAAGTCAAAATGTGATTGCTGGCTTTGAAAATGGATGGAAGCCACACCCCAGGGATCGTGGACAGCCTTTAGAACCAGAAAAGGACAAGGAAACAGATTCTCCAGTCCTCTAGAACCTCCAGAAGGAACATGGCTCTGCTAATACTATGATATTAGCCCTTTCAGACTGATTTCAGACTTCTGACCAGCAGAGGTATAAATCATAATTATATTGATTTAAGCCACTAAATTAGTGGTTATTAGTAACGGCAGCAACAGGAAACTATATCAGCAACAAGACTCCTTCCTTCATAGAACCCAATTCCCAACCAATTTTCAAACTTTCACAGAAAATCTTGCCACACACTGAGACTAGGAACATCCAACAAAAAAATGCTATCACTTTCAAATGGAAAACCCAGGATTGTAGAGAAGATCAAATTTTGTCATGTATCACATTTAAACACTCATCTCTACCTCACCAAACCGTGGTACTAATGTGTACCAATCTTAAAAGGAGGTATTTCTGTTCCCTCAGAGCTCTGGGCAGAAGACTATGCCTGTGGACAATGTAGAATTATCTGCTGAATGAATATCTGAAAACTGTTTGGAGAGGGGAAAAGCATTGAGAAGAATTGGGCTCTTTGCTACTATTACTCGCTAGAATGGGAGACGTTTGGAAGCAGTTCCCTTAAGGAACCAAACAAGGCAGGAAATTCTGGGATAAATCTGGTGTTCACATTACACAACAAAATGATTGTACTTCAAGAAGGAAAGAAACAGCAACTCACGTGGGGCATGGTTTTTTAGAACTGATCAATTTTCTGGGTTCTTCTCCTGGAGGTGTGCAAAGTCCAGAGAAGCCAGTGCTGGACAAGGAAAAGAAGCCACAAGATTAGACTTGGCTCACAGCCCACAAAATAAACTACTTAGAACTACCTTTACTTCTCCTCTTTTGGGAATTTGGAAAAAATCTCAGTTCTTCCACAAACCCAATGGAAGCCAGCTACTGCAGAAGGGGTTCAGGCAGACCTTTCCTTAATGTCCATGTTGAACAGGACCCTAGGTGCTGTTACTTTCCCATGGCATCTCCTCTTCCACAGTAGAACAGAGGCATGCCCAGGGAGCCCCCCACCATCCTCCTGGACCCAAACACTAAGTCAGGTACTTTGCTCCCAATCTTAGGAAGGGGCTTCAGAGACCAAAATGTGGCCTTCTTTCAGACGTCATGAACATCAGCTAGACTCACAGACATTTTGACAGACATATCAGGGTCAACAGATCCAAAACAGTCTCATCCCACTCCCCTGAATCTAGTTCTTTCTTGCCTGTTTACTCTTCCCTATAAAAGAAAATTCCTTTATGCCTGACCTTTGCTATGCTTGCAGATCTTATGGCTGGAGTATTCTCCCAATTACAACACCTCCTCCCTTACTGCAGTGTTCCTGTGAATAAAGTCATTCCTTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267470:ENST00000585578:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCATCAGCATCCAGGGC
R:
TTCTGTAGGTGCCATCAGCCT
Band lengths:
345-1849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains