HsaEX1045254 @ hg38
Exon Skipping
Gene
ENSG00000267470 | ZNF571-AS1
Description
ZNF571 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44324]
Coordinates
chr19:37569850-37587348:+
Coord C1 exon
chr19:37569850-37569996
Coord A exon
chr19:37585084-37585161
Coord C2 exon
chr19:37585339-37587348
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTCCACGTTCCTAGGCT
3' ss Score
8.09
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
GGCTCACCTGAAACTTCATGTACCATTGCACTTCCTGAGAAGCTGTCCCCAATCCCAGGCTCCTAGCAATGCTGTTCCAGTAATCTCTCTTCTGTAAGACAGCCACTCCACCCACTGCAGTCTACAAGGAAAGCCTCCATAGCTGTG
Seq A exon
GCTATAGCAAGGTACTGGATGCCAGTCCAGGCACACAGAGACATCACTCTGAACTGGTACATTCCGGGAAATCCCAAG
Seq C2 exon
ATTATTCAGTAAGAACAGTCTCAGGAAAACAGGACCTTCAACAGAGATAAGAGAATTAAAATATGCAGACTAACAACTCTGGGAATGGGCTGACCAGCCTGATAAGAATAGGCTGATGGCACCTACAGAAGGCCACAAAACACTGACCAAGAAAGCAATGACCAACAAAGCAATGACCTGAGACTGCACATTTCACAAGAATGTTTTGATCATCATTTTTTCTAATTTCCCTTAAAAACCCCTGATATGGAGACAGAACTCGGCGGTCTTTGAACACTAGTTCACTGCCTCCCCTGGGTTGTTGGATTCCTGAATAGAGCTAACCATCCTTTCACCAATGCTCATCTCTTAAACTTTCAAGTGACAAGTGGTCTGGACCTGAATTTCGTTACAAAACCTATGTATACCTTACCTTACATGGCAAAGGGGACTTTAGAAGTGCAATTAAATTAAGGATCTTGAGAGGGGGTTATCCTGGATTATCTGGTTGGGCCCAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267470_MULTIEX1-10/10=8-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCACTGCAGTCTACAA
R:
TTCTGTAGGTGCCATCAGCCT
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains