HsaALTD0002836-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:16769]
Coordinates
chr3:39141796-39142368:-
Coord C1 exon
chr3:39142279-39142368
Coord A exon
chr3:39142238-39142278
Coord C2 exon
chr3:39141796-39141994
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ATGTTTCTGGCCTTCGGCAGTCT
3' ss Score
5.86
Exon sequences
Seq C1 exon
TCCGAGGACTTCTTTACGCTCATCGAGTCTCATGAGGGGAAGCCCTTGAAGCTGATGGTGTATAACTCCAAGTCAGACTCCTGCCGGGAG
Seq A exon
GTGACTGTAACTCCCAACGCAGCCTGGGGTGGAGAGGGCAG
Seq C2 exon
TCTGGGATGTGGCATTGGCTATGGGTATCTACACCGGATCCCAACTCAGCCCCCCAGCTACCACAAGAAGCCACCTGGCACCCCACCACCTTCTGCTCTACCACTTGGTGCCCCACCACCTGATGCTCTACCACCTGGACCCACCCCCGAGGACTCTCCTTCCCTGGAGACAGGTTCCAGGCAGAGTGACTACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745-20-16,21-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.679
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(25.9=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=23.9)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAGGGGAAGCCCTTGAA
R:
GTGGCTTCTTGTGGTAGCTGG
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)