MmuALTD0006169-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000032513 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:MGI Symbol;Acc:MGI:1921748]
Coordinates
chr9:119838669-119839217:-
Coord C1 exon
chr9:119839132-119839217
Coord A exon
chr9:119839091-119839131
Coord C2 exon
chr9:119838669-119838879
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ACACATCTGGCTTTCCACAGTCT
3' ss Score
7.72
Exon sequences
Seq C1 exon
AAGACTTCTTTACTCTCATTGAGTCCCATGAGGGGAAGCCTCTGAAGCTGATGGTGTATAACTCGGAGTCCGACTCCTGCCGGGAG
Seq A exon
GTGACTGTGACTCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq C2 exon
TCTGGGGTGTGGTATTGGTTATGGGTACCTGCATCGGATCCCAACGCAACCCTCCAGCCAGCACAAGAAGCCACCCGGTGCCACACCACCTGGCACTCCAGCTACGACCTCACAACTTACTGCCTTTCCTCTTGGTGCCCCACCACCTTGGCCTATCCCTCAGGACTCTTCTGGCCCAGAGTTGGGTTCCAGGCAGAGTGACTTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032513-5-5,6-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.803
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=22.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGGGGAAGCCTCTGAA
R:
GCTTCTTGTGCTGGCTGGAG
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: