GgaALTD0002367-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5193794-5194606:+
Coord C1 exon
chr2:5193794-5193879
Coord A exon
chr2:5193880-5193920
Coord C2 exon
chr2:5194465-5194606
Length
41 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GTTTTACTTCTGTTGTGCAGTTT
3' ss Score
5.93
Exon sequences
Seq C1 exon
AAGATTTCTTCTCGCTGATTGAGTCCCATGAGGGAAAGCCGCTGAAGCTGATGGTTTATAACACTGAAGCAGACTCCATTCGAGAG
Seq A exon
GTAGTTGTGACTCCCAATGGAGCTTGGGGTGGAGAAGGAAG
Seq C2 exon
TTTGGGATGTGGTATTGGATATGGCTATTTGCACAGGATTCCAACGCAGTCAGTAGTATCAAAGAAAAAGCCAGAAAGCAAACCACCTTCGCCCTTACCAGAAGCTGGAACTCCTGTACCATCTACTAATGGTTACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033-6-12,7-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.625
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTGAAGCTGATGGTTTA
R:
AGGTGGTTTGCTTTCTGGCTT
Band lengths:
137-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]