GgaEX0008521 @ galGal3
Exon Skipping
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5193790-5195313:+
Coord C1 exon
chr2:5193790-5193920
Coord A exon
chr2:5194465-5194606
Coord C2 exon
chr2:5195169-5195313
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTTTTACTTCTGTTGTGCAGTTT
3' ss Score
5.93
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
TCAGAAGATTTCTTCTCGCTGATTGAGTCCCATGAGGGAAAGCCGCTGAAGCTGATGGTTTATAACACTGAAGCAGACTCCATTCGAGAGGTAGTTGTGACTCCCAATGGAGCTTGGGGTGGAGAAGGAAG
Seq A exon
TTTGGGATGTGGTATTGGATATGGCTATTTGCACAGGATTCCAACGCAGTCAGTAGTATCAAAGAAAAAGCCAGAAAGCAAACCACCTTCGCCCTTACCAGAAGCTGGAACTCCTGTACCATCTACTAATGGTTACACAGAG
Seq C2 exon
GCTCCGTTATTGGCACCTACTTCTCAAAGTGACAGCTCTGAAGTAGTTATGAGCCTGGATCATTCCACAGGCCAAGAAACAAGTGGGTATTCACCAGAAAGCTCACTTTCTCCTCCTCCTCCTCTCCAGAGAGTTATGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033-'7-16,'7-12,8-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.068 A=0.625 C2=1.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGATTGAGTCCCATGAGG
R:
TGGAGAGGAGGAGGAGGAGAA
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event