HsaEX1015860 @ hg38
Exon Skipping
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1 [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr3:39099353-39101102:-
Coord C1 exon
chr3:39101016-39101102
Coord A exon
chr3:39100305-39100503
Coord C2 exon
chr3:39099353-39099503
Length
199 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTGGCCTTCGGCAGTCT
3' ss Score
5.86
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
Seq A exon
TCTGGGATGTGGCATTGGCTATGGGTATCTACACCGGATCCCAACTCAGCCCCCCAGCTACCACAAGAAGCCACCTGGCACCCCACCACCTTCTGCTCTACCACTTGGTGCCCCACCACCTGATGCTCTACCACCTGGACCCACCCCCGAGGACTCTCCTTCCCTGGAGACAGGTTCCAGGCAGAGTGACTACATGGAG
Seq C2 exon
GCCCTGCTGCAGGCACCTGGCTCCTCCATGGAGGATCCCCTTCCTGGGCCTGGGAGTCCCAGCCACAGTGCTCCAGACCCTGATGGACTTCCCCATTTCATGGAGACTCCTCTTCAGCCCCCACCTCCAGTGCAGCGAGTTATGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.655 C2=0.800
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
PF044959=GRASP55_65=PD(10.5=12.0)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGAACCATCTTCACCTGC
R:
GGTCCATAACTCGCTGCACTG
Band lengths:
234-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains