DreEX0035544 @ danRer10
Exon Skipping
Gene
ENSDARG00000015126 | gorasp2
Description
golgi reassembly stacking protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1659]
Coordinates
chr6:3708605-3709155:+
Coord C1 exon
chr6:3708605-3708735
Coord A exon
chr6:3708815-3708947
Coord C2 exon
chr6:3709032-3709155
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGATTATTTTCCCGATTCAGTCT
3' ss Score
6.62
5' ss Seq
GAGGTTAAT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TCAGAGGACTTGTTCTCATTGATAGAAACGCATGAGGGCAAAGGCCTGAAGCTCTACGTCTACAACACTGACACAGACAACTGCAGAGAAGTGGTCATTACACCCAACAGTGCCTGGGGCGGAGAGGGCAG
Seq A exon
TCTTGGCTGTGGGATTGGATACGGCTACCTTCACAGAATCCCAACCCGACCCTTTGAAGAGGGCAAGAAAATCAGTTTCCCCGGACACACCCCCAGTGAGCCTGTTAGCCCGCTAAAGGACGGCTTCACTGAG
Seq C2 exon
GTTCAGCTCTCCGCAGTAACTCCGCCCCCTGTGTCACAGCCTCTTCCCACAGGCCTCGAGGACAGTCTGTCTGGCCTGTCACTCAGCTCTGCCCCGCCCACAATTCCCAGCGAGCTCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015126-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.556 C2=1.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=35.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTGTTCTCATTGATAGAAACGC
R:
GAGCTCGCTGGGAATTGTGG
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]