BtaEX6009105 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013218 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:25575615-25582059:-
Coord C1 exon
chr2:25581929-25582059
Coord A exon
chr2:25577411-25577543
Coord C2 exon
chr2:25575615-25575738
Length
133 bp
Sequences
Splice sites
3' ss Seq
AGAAAAAATTATTTTCTCAGCCT
3' ss Score
1.37
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TCTGAAGATCTGTTCAGCCTTATTGAAACACATGAAGCAAAACCATTGAAACTTTATGTGTATAATACAGACACTGATAACTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGGGTGGAGAAGGCAG
Seq A exon
CCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACACGCCCATTTGAAGAAGGAAAGAAAATTTCTCTTCCAGGACAGATGACCGGTACACCAATTACTCCTCTTAAAGATGGGTTTACAGAG
Seq C2 exon
GTCCAGCTGTCCTCAGTCAATCCCCCGTCTTTGTCACCACCAGGAACTACAGAAATTGAACAGAGTCTGTCTGGACTTTCTATTAGTTCAACTCCACCAGCTGTCAGTAATGTTCTCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013218-'12-10,'12-7,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.533 C2=0.857
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=35.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATCTGTTCAGCCTTATTGA
R:
ACATTACTGACAGCTGGTGGAG
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]