GgaEX1027016 @ galGal4
Exon Skipping
Gene
ENSGALG00000009583 | GORASP2
Description
Golgi reassembly-stacking protein 2 [Source:RefSeq peptide;Acc:NP_001012612]
Coordinates
chr7:17671784-17673837:-
Coord C1 exon
chr7:17673751-17673837
Coord A exon
chr7:17672518-17672650
Coord C2 exon
chr7:17671784-17671870
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCATATTTTAAAAGCCT
3' ss Score
4.69
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGTGGAACCAAACTCTCCTGCTGCATTAGCTGGGCTCAGACCTCATAGCGACTATATCATTGGAGCAGATACTGTCATGAATGAG
Seq A exon
CCTAGGGTGTGGCATTGGCTATGGGTATTTGCATAGGATACCTACGCGCCCATTTGAAGAGGGAAAGAAGATCTCTCTCCCAGGACAGCTGCCCAGTGCATCTCTCAGTCCTCTCAAAGATGGCTTTACAGAG
Seq C2 exon
GAGTTCCGACAGTCCCGTTGTTACCACCGCAGGTCAGTCAGTCCCTTACCTCCGTGCCACCAGTTAACCCAGCAACAACACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009583_MULTIEX1-2/4=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.244 C2=0.833
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(20.4=100)
A:
PF044959=GRASP55_65=PD(11.7=35.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACCAAACTCTCCTGCT
R:
CAGGTAGTGTTGTTGCTGGGT
Band lengths:
171-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]