GgaEX1027016 @ galGal3
Exon Skipping
Gene
ENSGALG00000009583 | Q5F353_CHICK
Description
NA
Coordinates
chr7:19634035-19635086:-
Coord C1 exon
chr7:19634956-19635086
Coord A exon
chr7:19634284-19634416
Coord C2 exon
chr7:19634035-19634158
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCATATTTTAAAAGCCT
3' ss Score
4.69
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACTGAAGATCTCTTTTCCCTTATTGAAACACATGAAGCAAAGCCATTAAAACTTTATGTATATAACACAGACACAGATAACTGCCGGGAAGTGGTGATAACTCCAAATTCTGCCTGGGGTGGAGAAGGCAG
Seq A exon
CCTAGGGTGTGGCATTGGCTATGGGTATTTGCATAGGATACCTACGCGCCCATTTGAAGAGGGAAAGAAGATCTCTCTCCCAGGACAGCTGCCCAGTGCATCTCTCAGTCCTCTCAAAGATGGCTTTACAGAG
Seq C2 exon
GTTCAGCTGTCATCAGTTAACCCCTCACCGGCATTACCCCCTGGGCCAGCAGGACTCGAGCAGAGTCTGTCAGGACTTTCTATTAGCTCGCCCTCGACTACTGTCAGTAATGTTCTTAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009583-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.244 C2=0.714
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=35.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGATCTCTTTTCCCTTATTGA
R:
GACAGTAGTCGAGGGCGA
Band lengths:
236-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]