MmuEX6102053 @ mm10
Exon Skipping
Gene
ENSMUSG00000014959 | Gorasp2
Description
golgi reassembly stacking protein 2 [Source:MGI Symbol;Acc:MGI:2135962]
Coordinates
chr2:70679432-70684103:+
Coord C1 exon
chr2:70679432-70679562
Coord A exon
chr2:70682897-70683029
Coord C2 exon
chr2:70683980-70684103
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATAAGAAAAATGTTTTTTAGCCT
3' ss Score
1.85
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCTGAAGACCTGTTCAGCCTTATTGAGACCCACGAAGCAAAGCCCCTGAAGCTCTACGTGTACAACACAGACACAGACAACTGCAGAGAAGTGATCATCACACCAAACTCTGCATGGGGCGGAGAAGGCAG
Seq A exon
CCTTGGATGTGGCATTGGCTATGGTTATTTGCACCGAATACCTACACGCCCCTTTGAAGAAGGAAAGAAGATTTCCCTTCCAGGACAAATGACTGGTACCCCCATTACTCCTCTTAAGGATGGGTTTACAGAG
Seq C2 exon
GTCCAGCTGTCTTCAGTCAGTCCTCCATCTTTGTCACCACCAGGAACTACAGGAGTTGAGCAGAGTCTGTCTGGACTCTCCATTAGCTCGGCACCACCAGCTGTCAGCAATGTTCTCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014959-'17-23,'17-21,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.511 C2=0.702
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=35.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCAGCCTTATTGAGACC
R:
TGAGAACATTGCTGACAGCTGG
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types