HsaEX0028060 @ hg38
Exon Skipping
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2 [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:170951328-170961749:+
Coord C1 exon
chr2:170951328-170951458
Coord A exon
chr2:170954650-170954782
Coord C2 exon
chr2:170961663-170961749
Length
133 bp
Sequences
Splice sites
3' ss Seq
AGAAAAAAATGTTTTTATAGCCT
3' ss Score
2.56
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCTGAAGATCTATTCAGCCTTATCGAAACACATGAAGCAAAACCATTGAAACTGTATGTGTACAACACAGACACTGATAACTGTCGAGAAGTGATTATTACACCAAATTCTGCATGGGGTGGAGAAGGCAG
Seq A exon
CCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACACGCCCATTTGAGGAAGGAAAGAAAATTTCTCTTCCAGGACAAATGGCTGGTACACCTATTACACCTCTTAAAGATGGGTTTACAGAG
Seq C2 exon
GTGTACCAACAGTACCGTTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCCACCAATGAATCCAGCTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806_MULTIEX1-4/7=2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.444 C2=0.850
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=35.6)
C2:
NO
Main Skipping Isoform:
ENST00000234160fB16495
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGATCTATTCAGCCTTATCGA
R:
TGTAGTAGCTGGATTCATTGGTGG
Band lengths:
210-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development