HsaEX0028061 @ hg38
Exon Skipping
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2 [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:170954650-170961749:+
Coord C1 exon
chr2:170954650-170954782
Coord A exon
chr2:170956436-170956559
Coord C2 exon
chr2:170961663-170961749
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTTTTGGAAGGTC
3' ss Score
7.88
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACACGCCCATTTGAGGAAGGAAAGAAAATTTCTCTTCCAGGACAAATGGCTGGTACACCTATTACACCTCTTAAAGATGGGTTTACAGAG
Seq A exon
GTCCAGCTGTCCTCAGTTAATCCCCCGTCTTTGTCACCACCAGGAACTACAGGAATTGAACAGAGTCTGACTGGACTTTCTATTAGCTCAACTCCACCAGCTGTCAGTAGTGTTCTCAGTACAG
Seq C2 exon
GTGTACCAACAGTACCGTTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCCACCAATGAATCCAGCTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806_MULTIEX1-5/7=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.774 C2=0.850
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PD(11.7=35.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGATGTGGCATTGGATATGG
R:
CTGGTAATGTAGTAGCTGGATTCA
Band lengths:
220-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development