GgaEX1027017 @ galGal3
Exon Skipping
Gene
ENSGALG00000009583 | Q5F353_CHICK
Description
NA
Coordinates
chr7:19633550-19634416:-
Coord C1 exon
chr7:19634284-19634416
Coord A exon
chr7:19634035-19634158
Coord C2 exon
chr7:19633550-19633636
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCCTCCTGAAAAGGTT
3' ss Score
8.52
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCTAGGGTGTGGCATTGGCTATGGGTATTTGCATAGGATACCTACGCGCCCATTTGAAGAGGGAAAGAAGATCTCTCTCCCAGGACAGCTGCCCAGTGCATCTCTCAGTCCTCTCAAAGATGGCTTTACAGAG
Seq A exon
GTTCAGCTGTCATCAGTTAACCCCTCACCGGCATTACCCCCTGGGCCAGCAGGACTCGAGCAGAGTCTGTCAGGACTTTCTATTAGCTCGCCCTCGACTACTGTCAGTAATGTTCTTAGTACAG
Seq C2 exon
GAGTTCCGACAGTCCCGTTGTTACCACCGCAGGTCAGTCAGTCCCTTACCTCCGTGCCACCAGTTAACCCAGCAACAACACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009583-'9-13,'9-10,10-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.714 C2=0.835
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PD(11.7=35.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGTGTGGCATTGGCTATG
R:
CAGGTAGTGTTGTTGCTGGGT
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]