HsaEX0028061 @ hg19
Exon Skipping
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:17500]
Coordinates
chr2:171811160-171818259:+
Coord C1 exon
chr2:171811160-171811292
Coord A exon
chr2:171812946-171813069
Coord C2 exon
chr2:171818173-171818259
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTTTTGGAAGGTC
3' ss Score
7.88
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACACGCCCATTTGAGGAAGGAAAGAAAATTTCTCTTCCAGGACAAATGGCTGGTACACCTATTACACCTCTTAAAGATGGGTTTACAGAG
Seq A exon
GTCCAGCTGTCCTCAGTTAATCCCCCGTCTTTGTCACCACCAGGAACTACAGGAATTGAACAGAGTCTGACTGGACTTTCTATTAGCTCAACTCCACCAGCTGTCAGTAGTGTTCTCAGTACAG
Seq C2 exon
GTGTACCAACAGTACCGTTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCCACCAATGAATCCAGCTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806-'16-21,'16-19,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=0.786 C2=0.867
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PD(11.7=35.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGATGTGGCATTGGATATGG
R:
CTGGTAATGTAGTAGCTGGATTCA
Band lengths:
220-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)