DreEX6019955 @ danRer10
Exon Skipping
Gene
ENSDARG00000015126 | gorasp2
Description
golgi reassembly stacking protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1659]
Coordinates
chr6:3708815-3711208:+
Coord C1 exon
chr6:3708815-3708947
Coord A exon
chr6:3709032-3709155
Coord C2 exon
chr6:3711122-3711208
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGATGCTCTGTTTAGGTT
3' ss Score
8.43
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
TCTTGGCTGTGGGATTGGATACGGCTACCTTCACAGAATCCCAACCCGACCCTTTGAAGAGGGCAAGAAAATCAGTTTCCCCGGACACACCCCCAGTGAGCCTGTTAGCCCGCTAAAGGACGGCTTCACTGAG
Seq A exon
GTTCAGCTCTCCGCAGTAACTCCGCCCCCTGTGTCACAGCCTCTTCCCACAGGCCTCGAGGACAGTCTGTCTGGCCTGTCACTCAGCTCTGCCCCGCCCACAATTCCCAGCGAGCTCCACACAG
Seq C2 exon
GCGTTCCAACAGTCCCTCTGCTGCCCACTCATGTGACCCCTGGGCTGGGTAACCTTCCCCTCATCAACCCATCCACCAACGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015126-'8-12,'8-9,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=1.000 C2=0.867
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PD(11.7=35.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTGTGGGATTGGATACG
R:
CTGGTCCGTTGGTGGATGG
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]