BtaEX6009106 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013218 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:25572180-25577543:-
Coord C1 exon
chr2:25577411-25577543
Coord A exon
chr2:25575615-25575738
Coord C2 exon
chr2:25572180-25572266
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTATTTTTTGGAAGGTC
3' ss Score
7.01
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CCTAGGATGTGGCATTGGATATGGTTATTTGCATCGAATACCTACACGCCCATTTGAAGAAGGAAAGAAAATTTCTCTTCCAGGACAGATGACCGGTACACCAATTACTCCTCTTAAAGATGGGTTTACAGAG
Seq A exon
GTCCAGCTGTCCTCAGTCAATCCCCCGTCTTTGTCACCACCAGGAACTACAGAAATTGAACAGAGTCTGTCTGGACTTTCTATTAGTTCAACTCCACCAGCTGTCAGTAATGTTCTCAGTACAG
Seq C2 exon
GTGTACCAACGGTACCATTATTGCCACCACAAGTAAACCAGTCCCTCACATCTATGCCGCCAATGAACCCAACTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013218-'13-16,'13-10,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.857 C2=0.933
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PD(11.7=35.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGATGTGGCATTGGATATGG
R:
CTGGTAATGTAGTAGTTGGGTTCA
Band lengths:
220-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]