BtaEX6093510 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047135 | GORASP1
Description
Bos taurus golgi reassembly stacking protein 1, 65kDa (GORASP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046518]
Coordinates
chr22:12472388-12473917:-
Coord C1 exon
chr22:12473787-12473917
Coord A exon
chr22:12473370-12473562
Coord C2 exon
chr22:12472388-12472538
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTGGCCTTTGGCAGCCT
3' ss Score
6.65
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
TCCGAGGACTTCTTCTCGCTCATCGAGTCCCACGAGGGGAAGGCCTTGAAGCTGATGGTTTACAATTCTGAGTCTGACTCCTGCCGGGAGGTGACTGTCACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq A exon
CCTGGGCTGTGGTATTGGTTACGGGTATCTGCACCGGATCCCAACCCAGCCCCCCAGCCACCACAAGAAGCCGCCTGGTGGCCCGCCGCCCAGTGCCCCACCGCCTGGTGCTCCACCGCCTGGACCCGGCTCCCAGGACTCTCCTGCCCCTTTTGGCCTGGAGACAGGCTCCAAACAGGGTGAATATGTGGAG
Seq C2 exon
GCCTTGCTGCAGGCACCTGACTCCTCCACAGAGGAACAGCCCCCTGGGCCTGAAAGTCTTACCCAGGGCGCTCAAGACCTTGGAGACCCACCCCGTTCCATGGAGATTCCTCTGCAGCCTCCACCTCCACTGCAGCGAGTCATGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047135-'25-9,'25-7,26-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
PF044959=GRASP55_65=PD(11.7=24.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGGACTTCTTCTCGCTC
R:
AGGCTGCAGAGGAATCTCCAT
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]